Data Sciences and Bioinformatics Publications

2024

Ecological competition in the oral mycobiome of Hispanic adults living in Puerto Rico associates with periodontitis

Acosta-Pagán, Kimil; Bolaños-Rosero, Benjamín; Pérez, Cynthia; Ortíz, Ana P.; Godoy-Vitorino, Filipa

Ecological competition in the oral mycobiome of Hispanic adults living in Puerto Rico associates with periodontitis

In: Journal of Oral Microbiology, 2024.

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2023

Edible flora in pre-Columbian Caribbean coprolites: Expected and unexpected data

J, Reynoso-García; TM, Santiago-Rodriguez; Y, Narganes-Storde; RJ, Cano; GA, Toranzos

Edible flora in pre-Columbian Caribbean coprolites: Expected and unexpected data

In: PLoS One, 2023.

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Unraveling the functional dark matter through global metagenomics

GA, Pavlopoulos; FA, Baltoumas; S, Liu; O, Selvitopi; AP, Camargo; S, Nayfach; A, Azad; S, Roux; L, Call; NN, Ivanova; IM, Chen; D, Paez-Espino; E, Karatzas; Consortium, Novel Metagenome Protein Families; I, Iliopoulos; K, Konstantinidis; JM, Tiedje; J, Pett-Ridge; D, Baker; A, Visel; CA, Ouzounis; S, Ovchinnikov; A, Buluç; NC, Kyrpides

Unraveling the functional dark matter through global metagenomics

In: Nature, 2023.

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Comparison Between Bayesian and Frequentist Tail Probability Estimates

Shen, Nan; González-Arévalo, Bárbara; Pericchi, Luis Raúl

Comparison Between Bayesian and Frequentist Tail Probability Estimates

In: N Engl J STAT DATA SCI, 2023.

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Bacterial characterization of digestive tract of the Horned Screamer (Anhima cornuta), a tropical herbivorous “unicorn” bird

M., García-Amado; C., Rudolf; M., Fuentes-Fuentes; M., Martínez; N., Chorna; F, Godoy-Vitorino

Bacterial characterization of digestive tract of the Horned Screamer (Anhima cornuta), a tropical herbivorous “unicorn” bird

In: PeerJ 11:e14805, 2023.

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 The Epibiotic Microbiota of Wild Caribbean Sea Urchin Spines Is Species Specific

R, Rodríguez-Barreras; A, Dominicci-Maura; EL, Tosado-Rodríguez; F, Godoy-Vitorino

The Epibiotic Microbiota of Wild Caribbean Sea Urchin Spines Is Species Specific

In: 2023.

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2022

Bioinformatic Characterization and Molecular Evolution of the Lucina pectinata Hemoglobins

IM, Montes-Rodríguez; CL, Cadilla; J, López-Garriga; R, González-Méndez

Bioinformatic Characterization and Molecular Evolution of the Lucina pectinata Hemoglobins

In: Genes (Basel), 2022.

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Widespread Gene Expression Divergence in Butterfly Sensory Tissues Plays a Fundamental Role During Reproductive Isolation and Speciation

Wu, Ningning; Evans, Elizabeth; van Schooten, Bas; Meléndez-Rosa, Jesyka; Ortiz, Yadira; Soto-Navarro, Silvia M. Planas; Belleghem, Steven M. Van; Counterman, Brian A.; Papa, Riccardo; Zhang, Wei

Widespread Gene Expression Divergence in Butterfly Sensory Tissues Plays a Fundamental Role During Reproductive Isolation and Speciation

In: Mol. Biol. Evol. 39(11), 2022.

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A butterfly pan-genome reveals that a large amount of structural variation underlies the evolution of chromatin accessibility

Ruggieri, Angelo A.; Livraghi, Luca; Lewis, James J.; Evans, Elizabeth; Cicconardi, Francesco; Hebberecht, Laura; Ortiz-Ruiz, Yadira; Montgomery, Stephen H.; Ghezzi, Alfredo; Rodriguez-Martinez, José Arcadio; Jiggins, Chris D.; McMillan, W. Owen; Counterman, Brian A.; Papa, Riccardo; Belleghem, Steven M. Van

A butterfly pan-genome reveals that a large amount of structural variation underlies the evolution of chromatin accessibility

In: Genome Res. 2022, 2022.

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Upregulation of the Long Noncoding RNA CASC10 Promotes Cisplatin Resistance in High-Grade Serous Ovarian Cancer

R, Noriega-Rivera; M, Rivera-Serrano; RJ, Rabelo-Fernandez; J, Pérez-Santiago; F, Valiyeva; PE, Vivas-Mejía

Upregulation of the Long Noncoding RNA CASC10 Promotes Cisplatin Resistance in High-Grade Serous Ovarian Cancer

In: Int J Mol Sci. 2022, 2022.

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Honeybee Re-identification in Video: New Datasets and Impact of Self-supervision

J., Chan; H., Carrión; R., Mégret; J., Rivera; T, Giray

Honeybee Re-identification in Video: New Datasets and Impact of Self-supervision

In: Proceedings of the 17th International Joint Conference on Computer Vision, Imaging and Computer Graphics Theory and Applications - Volume 4, 2022, ISBN: 978-989-758-555-5.

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Automated Video Monitoring of Unmarked and Marked Honey Bees at the Hive Entrance

Rodriguez, I. F.; Chan, J.; Alvarez Rios, M.; Branson, K.; Agosto-Rivera, J. L.; Giray, T.; Mégret, R

Automated Video Monitoring of Unmarked and Marked Honey Bees at the Hive Entrance

In: Frontiers in Computer Science, 2022.

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 Atomic Structures of Single-Layer Nanoislands of Ni, Cu, Rh, Pd, Ag, Ir, Pt, Au Supported on Au(111) from Density Functional Theory Calculations.

TC, Fernández-Félix; JA, Santana

Atomic Structures of Single-Layer Nanoislands of Ni, Cu, Rh, Pd, Ag, Ir, Pt, Au Supported on Au(111) from Density Functional Theory Calculations.

In: Surf Sci., iss. 2022 Feb, no. 716, 2022.

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Increasing the replicability for linear models via adaptive significance levels

Vélez, D.; Pérez, M. E.; Pericchi, L. R.

Increasing the replicability for linear models via adaptive significance levels

In: TEST, 2022.

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2021

 A Comparison of DFT Methods

GA, Vázquez-Lizardi; LA, Ruiz-Casanova; RM, Cruz-Sánchez; JA, Santana

A Comparison of DFT Methods

In: Surf Sci, iss. 2021 Oct, no. 712, 2021.

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Simulation of Metal-Supported Metal-Nanoislands: A Comparison of DFT Methods

Ruiz-Casanova LA Vázquez-Lizardi GA, Cruz-Sánchez RM

Simulation of Metal-Supported Metal-Nanoislands: A Comparison of DFT Methods

In: Surf Science, 2021.

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Hydrogen Adsorption on Au-Supported Pt and Pd Nanoislands: A Computational Study of Hydrogen Coverage Effects

JA, Santana; J, Meléndez-Rivera

Hydrogen Adsorption on Au-Supported Pt and Pd Nanoislands: A Computational Study of Hydrogen Coverage Effects

In: Phys Chem C Nanomater Interfaces, iss. 2021 Mar 11, no. 125(9):5110-5115, 2021.

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